PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462947095

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

HB-other

Protein Properties

Length: 1027aa MW: 116158 Da PI: 7.3843

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462947095	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.4	5.8e-14	20	72	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q++ Le+++ + +yp+ e++ e A+ +gLt +qV++WF+ rR ke++ 462947095 20 TKKSPLQIQMLEKFYTEVQYPKPEDMVEYATTVGLTYSQVRIWFKERRRKERR 72 566899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.2E-14	13	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.965	13	73	IPR001356	Homeobox domain
SMART	SM00389	3.0E-14	15	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.69E-13	17	77	IPR009057	Homeodomain-like
CDD	cd00086	3.23E-8	20	63	No hit	No description
Pfam	PF00046	2.3E-11	21	72	IPR001356	Homeobox domain
Pfam	PF15612	8.9E-6	592	623	IPR028942	WHIM1 domain
Pfam	PF15613	1.0E-6	720	759	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1027 aa Download sequence Send to blast
MPPAQMMINN LGAKRENAGT KKSPLQIQML EKFYTEVQYP KPEDMVEYAT TVGLTYSQVR 60 IWFKERRRKE RREMETTGAR MERQLSSRSS GPRCSSNASS YNQAPLSESS SISIIGEEHT 120 VRRQGLFHKD YILRKIFRKD GPPLGNEFDP LPQSAHGIIR DATCYDSSLS RRAVNKRKIM 180 EYTDQRSTVP HEDTVPVRKH GIGKGLMTVW HAMYSQSHSV ECQGGSSFID ETGCLRSLRP 240 FDVSDRLEDQ DNGKRIQIKL QSQVMPRKKV DKRSKTPLNK RKVPCRRAIV PKEHSRMDCH 300 LSVDKSELSE RQTELVALVD DEELELSELQ ADLLAKFPPQ SVKMKQPFSM KPWDSSPEML 360 KKLFQVARFV YTHFGNIDVH PFTFDELVQA FHDKVREQEF DVNFWIKSLN SLTWVEILRQ 420 VLVASGFGSK QHMNRDFYDK EKNQMVKYGL RPRTLKGELF ALLSKKGSNG LKVSELAKSP 480 EIVDLNIPGT SELEQLICST LSSDITLFEK IASSAYRLRV DPRIKGKEDT RSDSEECVSV 540 DDEEDACSSD DEPDGSQKIN FPEHERSIVR RKKRKIVHES PNKCCEIDES CPGERWLLGL 600 MEGEYSDLSI DEKLDCLVAL IDVVSGACSV PRLEGPPKVS QNAPKVQPCP SGGKIKKSTK 660 NISLSSDESL NGPGSQGSQG HTVDSRRNDL SGIAHEPQVV LLGSDRRADD PGHRRVYFES 720 SEDGHWEVVD SPQELLSLLS ILDRRGTREA HLLASLEKRQ ACLFEAMKKY LEDGNAVRLA 780 VSSDSCHSET SGDGASPQTS SVDGASPVSE IENTSVPTGH AVSNSDSSSA IVIEIGRSDD 840 EKILIWERLQ AFDKWIWASF YSILTAAKCG KKSFKESLVH CESCHDLYWR DEKHCRICHS 900 TFEVGFDLEE RYAVHVATCR EPEDMSEVPN HKVLPSQLQA LKASIHVIEA SMPEVAFVGS 960 WKKSAHKLWV KRLRRTSSLP ELLQDHTLAS MPEVAFVGSW KKSAHKLWVK RLRRTSSLPE 1020 LLQRWEA

Sequence ? help Back to Top

Protein Sequence Length: 1027 aa Download sequence Send to blast

MPPAQMMINN LGAKRENAGT KKSPLQIQML EKFYTEVQYP KPEDMVEYAT TVGLTYSQVR  60
IWFKERRRKE RREMETTGAR MERQLSSRSS GPRCSSNASS YNQAPLSESS SISIIGEEHT  120
VRRQGLFHKD YILRKIFRKD GPPLGNEFDP LPQSAHGIIR DATCYDSSLS RRAVNKRKIM  180
EYTDQRSTVP HEDTVPVRKH GIGKGLMTVW HAMYSQSHSV ECQGGSSFID ETGCLRSLRP  240
FDVSDRLEDQ DNGKRIQIKL QSQVMPRKKV DKRSKTPLNK RKVPCRRAIV PKEHSRMDCH  300
LSVDKSELSE RQTELVALVD DEELELSELQ ADLLAKFPPQ SVKMKQPFSM KPWDSSPEML  360
KKLFQVARFV YTHFGNIDVH PFTFDELVQA FHDKVREQEF DVNFWIKSLN SLTWVEILRQ  420
VLVASGFGSK QHMNRDFYDK EKNQMVKYGL RPRTLKGELF ALLSKKGSNG LKVSELAKSP  480
EIVDLNIPGT SELEQLICST LSSDITLFEK IASSAYRLRV DPRIKGKEDT RSDSEECVSV  540
DDEEDACSSD DEPDGSQKIN FPEHERSIVR RKKRKIVHES PNKCCEIDES CPGERWLLGL  600
MEGEYSDLSI DEKLDCLVAL IDVVSGACSV PRLEGPPKVS QNAPKVQPCP SGGKIKKSTK  660
NISLSSDESL NGPGSQGSQG HTVDSRRNDL SGIAHEPQVV LLGSDRRADD PGHRRVYFES  720
SEDGHWEVVD SPQELLSLLS ILDRRGTREA HLLASLEKRQ ACLFEAMKKY LEDGNAVRLA  780
VSSDSCHSET SGDGASPQTS SVDGASPVSE IENTSVPTGH AVSNSDSSSA IVIEIGRSDD  840
EKILIWERLQ AFDKWIWASF YSILTAAKCG KKSFKESLVH CESCHDLYWR DEKHCRICHS  900
TFEVGFDLEE RYAVHVATCR EPEDMSEVPN HKVLPSQLQA LKASIHVIEA SMPEVAFVGS  960
WKKSAHKLWV KRLRRTSSLP ELLQDHTLAS MPEVAFVGSW KKSAHKLWVK RLRRTSSLPE  1020
LLQRWEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	72	RRRKERRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661208.1	0.0	PREDICTED: uncharacterized protein LOC101768262 isoform X2
TrEMBL	K4A525	0.0	K4A525_SETIT; Uncharacterized protein
STRING	Si033977m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-110	Homeodomain-like transcriptional regulator